I’ve fallen head over heels for this Cream Cheese Zucchini Muffins Recipe, and honestly, once you try it, you’ll see why it’s a keeper in my kitchen. The delightful cream cheese swirl nestled inside tender, cinnamon-spiced zucchini muffins adds a surprise element that brings these muffins to a whole new level of yum. It’s that perfect marriage of cozy flavors with a little tang and creaminess that makes them a wonderful treat any time of the day.

Whether you’re looking for a crowd-pleasing snack, a nourishing breakfast, or a sweet yet not-too-sweet dessert, this Cream Cheese Zucchini Muffins Recipe fits the bill beautifully. I love how the shredded zucchini keeps the muffins moist without being heavy or greasy, and the cream cheese filling? Pure magic that makes each bite feel special. Plus, they’re pretty simple to whip up, which means more time enjoying and less stress in the kitchen.

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Why You’ll Love This Recipe

  • Moist and Fluffy: Thanks to the zucchini and cream cheese, these muffins stay soft and tender, even days after baking.
  • Easy to Make: Simple ingredients and straightforward steps make this recipe approachable for bakers of all levels.
  • Flavorful Twist: The cinnamon and nutmeg add warmth, while the creamy filling adds richness that’s surprisingly addictive.
  • Versatile Snack: Perfect for breakfast, a lunchbox addition, or a cozy afternoon treat with coffee or tea.

Ingredients You’ll Need

All these ingredients come together harmoniously to make muffins that are tender, lightly spiced, with just the right balance of creaminess. I recommend using fresh zucchini and room temperature eggs and cream cheese for the smoothest batter and filling.

  • All-purpose flour: Spoon it into the measuring cup and level it off so you don’t end up with too much flour, which can make the muffins dense.
  • Baking powder and baking soda: These leavening agents work together to give your muffins a nice lift.
  • Salt: Enhances all the flavors—don’t skip it!
  • Ground cinnamon and nutmeg: They bring warm, cozy spices that complement the mild zucchini perfectly.
  • Canola or vegetable oil: Keeps the muffins moist—feel free to sub in light olive oil if you want.
  • Brown sugar: Adds depth and a hint of caramel flavor.
  • Granulated sugar: Balances the sweetness when paired with brown sugar.
  • Large egg: Helps bind everything together—make sure it’s at room temperature.
  • Pure vanilla extract: A small but mighty ingredient that brings everything to life.
  • Shredded zucchini: No need to blot out the moisture; the zucchini’s natural juices keep things tender.
  • Cream cheese (full-fat brick): Softened and whipped up for that luscious cheesecake filling.
  • Egg yolk: Adds richness to the cream cheese layer.
  • Sugar (for filling): A touch of sweetness that balances the tang of the cream cheese.
  • Optional coarse sugar: Sprinkle on top for a pretty sparkle and a little crunch.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

One of the reasons I adore this Cream Cheese Zucchini Muffins Recipe is how easy it is to tweak it to your personal taste. Feel free to get creative with mix-ins or toppings to keep things fresh every time you make it.

  • Nutty Twist: My family loves adding a handful of chopped walnuts or pecans into the muffin batter for extra crunch and flavor.
  • Chocolate Lover’s Version: Stir in some mini chocolate chips—trust me, the cream cheese and zucchini pair perfectly with a touch of chocolate!
  • Loaf Cake: I once doubled the recipe and baked it as a quick bread loaf—instead of muffins—and it turned out fantastic for slicing as a snack.
  • Gluten-free Adaptation: Swap the all-purpose flour for a gluten-free blend—just ensure it has xanthan gum for the best texture.
  • Spice it Up: Try pumpkin pie spice instead of cinnamon and nutmeg for a seasonal twist that’s bursting with warm flavors.

How to Make Cream Cheese Zucchini Muffins Recipe

Step 1: Preheat and prep your muffin pan

Start by heating your oven to 425°F (218°C)—this initial high heat gives your muffins that beautiful rise right at the start. Spray a 12-count muffin pan generously with nonstick spray or line it with cupcake liners. I usually get about 10 muffins from this batter, so having a little extra space helps avoid overfilling.

Step 2: Mix your dry ingredients

Grab a large bowl and whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg until everything is nicely combined. This step ensures your spices and leavening agents are evenly distributed, giving your muffins a consistent flavor and texture.

Step 3: Whisk wet ingredients and add zucchini

In a separate bowl, whisk the oil, brown sugar, granulated sugar, egg, and vanilla extract until smooth. Then pop in your shredded zucchini—the moisture from the zucchini doesn’t need to be drained, so just fold it in. This part is important: the grated zucchini keeps the muffins moist and adds a subtle veggie goodness that’s sneaky but delicious.

Step 4: Combine wet and dry ingredients carefully

Pour the wet zucchini mixture into the bowl with your dry ingredients. Stir gently with a whisk or spatula until just combined—don’t over-mix here or your muffins might turn out tough instead of tender. It’s okay if the batter looks a little lumpy; that’s how it should be.

Step 5: Whip up the cream cheese filling

Using a mixer, beat the softened cream cheese until it’s smooth and creamy. Add in the egg yolk, vanilla, and sugar, and beat until well mixed. This filling is the star of the show, balancing the spiced zucchini with a creamy, tangy contrast in every bite.

Step 6: Assemble the layers in the muffin tin

Spoon a heaping tablespoon of your zucchini muffin batter into each muffin cup, then add a tablespoon of the cream cheese filling on top. Finish by adding another generous tablespoon of batter to cover the filling. Don’t stress if some cream cheese peeks out over the top—that’s a charming touch. If you love a little sparkle, sprinkle coarse sugar on top for subtle crunch and pretty browning.

Step 7: Bake at two temperatures

Bake the muffins at 425°F for 5 minutes to get that initial burst of rise. Then, without opening the oven door, reduce the temperature to 350°F (177°C) and bake for another 15-17 minutes. This two-step baking method creates bakery-style muffins with tall, domed tops and moist centers. Use a toothpick to check for doneness—it should come out with just a few moist crumbs, but no wet batter.

Step 8: Cool and serve

Let your muffins cool in the pan for at least 10 minutes before removing them. Cooling helps them firm up a bit, making them easier to handle and more enjoyable to eat. Serve warm or at room temperature—both are delicious.

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Pro Tips for Making Cream Cheese Zucchini Muffins Recipe

  • Don’t Overmix Batter: Mixing until just combined keeps your muffins tender. Over-mixing activates gluten and leads to tougher muffins.
  • Use Room Temperature Ingredients: It helps the batter come together smoothly and keeps the cream cheese filling silky and lump-free.
  • Initial High Heat Baking: The first 5 minutes at 425°F give your muffins a lovely lift, creating that bakery-style dome on top.
  • Don’t Drain Zucchini: I found leaving the moisture in keeps the muffins wonderfully moist—you won’t get soggy results!

How to Serve Cream Cheese Zucchini Muffins Recipe

A white plate holds three muffins, two whole and one broken in half showing a moist, light brown inside with bits of green and white cream cheese swirled inside. The muffins have a rough, golden-brown top sprinkled with shiny sugar crystals. Around the plate, there are more whole muffins placed directly on a white marbled surface. A small green zucchini is visible near the bottom left, and a soft green cloth is partly seen on the right. A small cluster of tiny white flowers rests next to the plate, adding a gentle touch to the scene. Photo taken with an iphone --ar 4:5 --v 6.1

Garnishes

I like to sprinkle a little coarse sugar on top before baking for a subtle crunch, but you could also dust them lightly with powdered sugar right before serving for a sweet finish. If you’re feeling fancy, a thin spread of softened cream cheese or a drizzle of honey really complements these muffins beautifully.

Side Dishes

These muffins pair wonderfully with a fresh cup of coffee or tea, and they’re also a hit when served alongside a fruit salad or yogurt parfait for a complete breakfast or brunch. For an afternoon snack, try them with a bit of nut butter on the side to add a little protein and richness.

Creative Ways to Present

I’ve recently brought these muffins to a picnic, layering them in a pretty basket with some fresh berries and a linen cloth—presentation made simple yet elegant. For a brunch party, you could stack them on a tiered cake stand with small bowls of fruit, cream cheese frosting, or even whipped cream nearby for guests to customize their servings.

Make Ahead and Storage

Storing Leftovers

I usually store leftover muffins covered tightly at room temperature for up to 2 days—they stay nice and soft this way. If you want them to last longer, keep them in an airtight container in the fridge for up to a week; just bring them to room temperature before eating or warm them up slightly.

Freezing

These muffins freeze beautifully, which is a lifesaver when baking in bulk. I freeze them individually wrapped in plastic wrap, then place them in a freezer-safe bag. They can last up to 3 months in the freezer. When you’re ready to enjoy one, just thaw it overnight in the fridge or pop it in the microwave for about 20 seconds.

Reheating

To keep their texture and flavor, I recommend reheating muffins gently in the microwave or oven. A quick zap for 15-20 seconds in the microwave or 5 minutes at 325°F in the oven does the trick—warm, soft, and ready to savor all over again.

FAQs

  1. Can I use frozen zucchini for this Cream Cheese Zucchini Muffins Recipe?

    Frozen zucchini can be used, but it’s important to thaw and thoroughly drain it to remove excess moisture so your muffins don’t turn out soggy. Freshly shredded zucchini without draining works perfectly for this recipe.

  2. What’s the purpose of baking at two different temperatures?

    The initial high temperature jump-starts the rise, giving you tall, fluffy muffin tops. Lowering the temperature afterward lets the muffins bake through evenly without over-browning or drying out.

  3. Can I make these muffins dairy-free?

    You can try substituting the cream cheese with a dairy-free cream cheese alternative and use a neutral oil. The texture might vary slightly, but they’ll still be tasty!

  4. How can I make sure the cream cheese filling stays in the center?

    Layer the batter carefully by adding enough on the bottom before the cream cheese, and cover completely with batter on top. It’s normal if some filling peeks out, but this technique helps keep most inside.

  5. Can I double this recipe?

    Absolutely! Just double the ingredients and bake the batter either in two muffin pans or try turning it into a loaf. Watch the baking time carefully, as it might need a bit longer when baked as a loaf.

Final Thoughts

This Cream Cheese Zucchini Muffins Recipe truly feels like a little slice of comfort wrapped up in muffin form. I remember the first time I baked these—they were devoured so fast that I had to double the batch the very next day! I hope you find the same joy in making and eating these muffins as I do. They’re perfect whether you’re welcoming friends or sneaking a treat for yourself on a quiet afternoon. So go ahead, give them a try—you won’t regret it!

Print
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Cream Cheese Zucchini Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 120 reviews
  • Author: Julia
  • Prep Time: 15 minutes
  • Cook Time: 22 minutes
  • Total Time: 37 minutes
  • Yield: 10 muffins
  • Category: Baking
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

These Cream Cheese Zucchini Muffins are soft, moist, and filled with a luscious creamy cheesecake center. Featuring warm spices like cinnamon and nutmeg paired with fresh shredded zucchini, they are perfect for breakfast or a comforting snack. The baking technique starts at a high temperature to lift the muffin tops, then lowers for thorough cooking, resulting in bakery-style muffins with a tender crumb.


Ingredients

Units Scale

Muffin Batter

  • 1 and 1/2 cups (188g) all-purpose flour (spooned & leveled)
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 1/2 cup (120ml) canola or vegetable oil
  • 1/4 cup (50g) packed light or dark brown sugar
  • 1/2 cup (100g) granulated sugar
  • 1 large egg, at room temperature
  • 1 teaspoon pure vanilla extract
  • 1 and 1/4 cups (150g) shredded zucchini (no need to blot)
  • Optional: coarse sugar for topping

Cheesecake Filling

  • 5 ounces (142g) full-fat brick cream cheese, softened to room temperature
  • 1 egg yolk, at room temperature
  • 1/2 teaspoon pure vanilla extract
  • 3 Tablespoons (36g) granulated sugar

Instructions

  1. Preheat and Prepare Pan: Preheat your oven to 425°F (218°C). Spray a 12-count muffin pan with nonstick spray or line it with cupcake liners to prevent sticking.
  2. Mix Dry Ingredients: In a large bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg until evenly combined. Set aside.
  3. Mix Wet Ingredients: In a medium bowl, combine the oil, brown sugar, granulated sugar, egg, and vanilla extract. Whisk together thoroughly, then stir in the shredded zucchini.
  4. Combine Batter: Pour the wet mixture into the dry ingredients and gently whisk or stir just until combined. Be careful not to over-mix to maintain a tender muffin texture.
  5. Prepare Cream Cheese Filling: Using a handheld or stand mixer fitted with a paddle or whisk attachment, beat the softened cream cheese on medium-high speed until smooth and creamy. Add egg yolk, vanilla extract, and sugar, continuing to beat until fully combined and fluffy.
  6. Assemble Muffins: Drop 1 heaping tablespoon of the zucchini batter into each muffin cup. Add 1 tablespoon of the cream cheese filling on top of the batter layer, then add another heaping tablespoon of zucchini batter to fill the cups to the top. The cream cheese filling may peek out over the top. Sprinkle coarse sugar on top, if using.
  7. Bake Muffins: Bake for 5 minutes at the high temperature of 425°F (218°C). Without removing the muffins, reduce the oven temperature to 350°F (177°C) and bake for an additional 15 to 17 minutes, for a total baking time of about 20 to 22 minutes.
  8. Cool and Serve: Allow the muffins to cool in the pan for at least 10 minutes before serving. Store leftovers tightly covered at room temperature for up to 2 days or refrigerate for up to 1 week.

Notes

  • Freezing Instructions: Freeze the muffins for up to 3 months for longer storage. Thaw overnight in the refrigerator and warm in the microwave before serving, if desired.
  • Special Tools: Recommended tools include a 12-count muffin pan, muffin liners, glass mixing bowls, a whisk, and an electric mixer (handheld or stand).
  • Zucchini Prep: There is no need to peel the zucchini before shredding, but it can be peeled based on preference.
  • Flavor Variations: You can double the recipe, turn this into a loaf, or experiment with other flavor additions as noted in recipe variations.
  • Baking Temperature Trick: Starting at a high oven temperature lifts muffin tops quickly for a bakery-style appearance, then baking at a lower temperature ensures the centers cook fully without overbrowning.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 270
  • Sugar: 14g
  • Sodium: 190mg
  • Fat: 15g
  • Saturated Fat: 5g
  • Unsaturated Fat: 9g
  • Trans Fat: 0g
  • Carbohydrates: 29g
  • Fiber: 2g
  • Protein: 4g
  • Cholesterol: 55mg

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