Pumpkin Cheesecake Thumbprint Cookies are the perfect union of pillowy-soft pumpkin cookies and luscious cheesecake filling, all wrapped up in cozy autumn flavors. You’ll be amazed at how simple—and fast—these cookies come together, making them an absolute lifesaver for busy weeknights, last-minute gatherings, or those spontaneous pumpkin spice cravings. Expect irresistibly tender cookies bursting with pumpkin pie spices, rolled in a sparkly blanket of sugar, and finished with a rich, creamy cheesecake center. If you’re ready for a cookie that’s both easy and undeniably crowd-pleasing, these thumbprints deserve a spot at the top of your baking list.

Why You’ll Love This Recipe

  • Ridiculously Easy: No fancy steps—just basic mixing, chilling, rolling, baking, and filling. Done in about an hour!
  • Big Pumpkin Flavor: Each bite delivers that comforting warmth of pumpkin spice balanced by real pumpkin puree. No shortcuts here.
  • Cheesecake Surprise: Silky cream cheese filling amps up each cookie with an almost decadent twist—think mini pumpkin cheesecakes in cookie form.
  • Perfect for Prep and Parties: The dough chills while you prep the filling, so the workflow is smooth and seamless. These cookies are also big-time attention getters at any gathering.
  • Make Ahead Friendly: Both dough and filling can be prepped in advance and assembled when you’re ready. Yes, you can totally have your cookies and your free time too.

Ingredients You’ll Need

Everything about this recipe is designed for convenience and deliciousness. Here’s what you’ll be grabbing from your kitchen (and why):

  • Granulated Sugar: Sweetens the cookies and creates a sparkly exterior when rolling the dough balls. If you love that classic sugar-cookie crunch, don’t skip this step!
  • Unsalted Butter: The base for soft, tender cookies. Make sure it’s softened for easy mixing.
  • Egg: Binds the dough, helping each cookie keep its perfect shape.
  • Pumpkin Puree: Adds moisture, color, and unmistakable autumn flavor. Definitely use pure pumpkin, not pumpkin pie filling!
  • Vanilla Extract: Layers in warmth both in the cookie and the cream cheese filling.
  • All-Purpose Flour: The backbone for structure—but not too much, or you’ll lose that delicate texture.
  • Baking Powder: Gives the cookies a soft lift.
  • Salt: Balances the sweetness.
  • Pumpkin Pie Spice: The star player for that classic pumpkin flavor. If you love spice, add a pinch more.
  • Cream Cheese: For the dreamy, tangy-sweet cheesecake dollop. Room temperature blends smoothest—no lumps allowed!
  • Extra Rolling Sugar & Pumpkin Pie Spice: Coats the cookies in sparkle and spice before baking.

Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

Cookie recipes should always be an invitation to play! Here are some ideas:

  • Chocolate Drizzle: Once filled, drizzle melted dark or white chocolate over the cookies for a decadent touch.
  • Ginger Spice: Swap half the pumpkin pie spice in the dough and coating for ground ginger for some zing.
  • Maple Filling: Add a splash of maple syrup or a drop of maple extract to the cheesecake mixture for an extra autumn twist.
  • Nutty Crunch: Press a pecan half or a sprinkle of chopped walnuts on top of the cheesecake filling.
  • Gluten-Free: Substitute your favorite gluten-free all-purpose blend—just ensure it’s meant for baking cookies.

How to Make Pumpkin Cheesecake Thumbprint Cookies

Step 1: Cream the Butter and Sugar

Start by beating together the granulated sugar and softened butter until fluffy—this aerates the dough for those signature soft cookies. Add in the egg, pumpkin puree, and vanilla, and mix until everything is beautifully blended.

Step 2: Combine Dry Ingredients

In a separate bowl, whisk up the flour, baking powder, salt, and pumpkin pie spice. Dry ingredients need combining ahead of time—nobody wants a pocket of baking powder!

Step 3: Make the Dough

Gradually add the flour mixture to the wet ingredients, mixing gently until combined. Don’t overwork the dough; just mix until you don’t see any more dry bits. Wrap it in plastic, chill for 30 minutes. Chilling is key—it makes the dough easier to roll and keeps the cookies soft.

Step 4: Prep the Cheesecake Filling

While the dough chills, beat soft cream cheese until completely smooth and fluffy. Add sugar and vanilla, blending for a creamy, dreamy texture. Set aside.

Step 5: Shape, Coat, and Bake

Mix extra sugar and pumpkin pie spice in a small bowl. Roll the dough into 1-inch balls, coat each in the sugar-spice mix, and place on lined baking sheets about 2 inches apart. Bake at 350°F for about 12 minutes, until edges are just golden.

Step 6: Make the Thumbprint

Straight from the oven, gently press an indentation into each cookie with a measuring spoon—this is where all that cheesecake magic will sit. Cool on sheet for 5 minutes before transferring to a wire rack.

Step 7: Fill with Cheesecake

Once the cookies are completely cooled, spoon cheesecake filling into each thumbprint. Sprinkle with any extra sugar-spice mix for extra sparkle.

Pro Tips for Making the Recipe

  • Room Temperature Dairy Makes All the Difference: Don’t rush the butter or cream cheese! Softened ingredients blend smoother and result in even-textured cookies.
  • Don’t Skip the Chill: Chilling helps the dough firm up, so the cookies don’t spread too much (no one likes a flat thumbprint).
  • Measure the Indent Gently: Too much force, and you’ll split the cookie. Use a rounded tablespoon for the perfect “thumbprint.”
  • Add Filling After Cooling: Resist the urge to fill the cookies while warm—otherwise, the cheesecake will melt and run.

How to Serve

Pumpkin Cheesecake Thumbprint Cookies shine on a plate all by themselves, but their creamy centers also love good company:

  • Pair with Coffee or Chai: These are a dream next to a mug of spiced chai or rich coffee.
  • Holiday Dessert Tray Ready: Mix with chocolate chip and gingerbread cookies for a delicious dessert spread.
  • Elegant Plating: Arrange on a platter, dust with a final sprinkle of pumpkin pie spice, and serve chilled or at room temperature.
  • Dress Them Up: Top the cheesecake centers with a candied pecan, a sprinkle of cinnamon, or even a tiny bit of caramel drizzle.

Make Ahead and Storage

Storing Leftovers

Keep any leftover cookies in an airtight container in the refrigerator. Because of the cream cheese filling, chilling is best—expect them to last at least 4-5 days.

Freezing

To freeze, lay the unfilled cookies in a single layer in an airtight container. When ready to serve, thaw at room temperature, then spoon in the cheesecake filling fresh for best texture.

Reheating

No reheating necessary! If you prefer a slightly warmer cookie, a quick 10-15 seconds in the microwave will do, but the cheesecake filling is best enjoyed cold or at room temperature.

FAQs

  1. Can the dough be made in advance?

    Absolutely! Make the dough up to 2 days ahead and refrigerate, wrapped tightly. If it feels too firm to roll, let it sit at room temperature for 10-15 minutes.

  2. What if I don’t have pumpkin pie spice?

    No problem—mix equal parts cinnamon, ginger, nutmeg, and a dash of cloves to make your own.

  3. Can I use store-bought pumpkin pie filling instead of pumpkin puree?

    It’s not recommended. Pumpkin pie filling is pre-sweetened and spiced, which can throw off the balance of the dough. Stick to pure pumpkin puree for best results.

  4. Can these cookies be made gluten-free?

    Yes! Substitute a 1:1 gluten-free flour blend designed for baking. The texture may vary slightly but the flavor will still wow.

Final Thoughts

If cozy season had a cookie mascot, Pumpkin Cheesecake Thumbprint Cookies would win the crown every time. Overflowing with warm spice, creamy filling, and melt-in-your-mouth texture, there truly isn’t a simpler way to impress guests or treat yourself. Whether you’re a confident baker or a weeknight dessert dabbler, this recipe is bound to make you (and anyone lucky enough to share a cookie) smile. So get that oven preheated and let your kitchen fill up with the sweetest autumn scents—you deserve every bite!

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Pumpkin Cheesecake Thumbprint Cookies Recipe

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  • Author: Julia
  • Prep Time: 15 minutes
  • Cook Time: 15 minutes
  • Total Time: 1 hour
  • Yield: 24 cookies 1x
  • Category: Desserts
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

These Pumpkin Cheesecake Thumbprint Cookies combine soft, spiced pumpkin cookies with a creamy cheesecake center. Rolled in pumpkin spice sugar for extra flavor and texture, these fall-inspired cookies are as attractive as they are delicious—perfect for holiday parties or cozy nights at home.


Ingredients

Units Scale

Pumpkin Cookie Dough

  • 1 1/2 cups granulated sugar
  • 3/4 cups unsalted butter, softened
  • 1 large egg
  • 1/2 cup pumpkin puree
  • 2 teaspoons vanilla extract
  • 2 1/2 cups all-purpose flour
  • 3/4 teaspoon baking powder
  • 1/2 teaspoon salt
  • 2 teaspoons pumpkin pie spice

Cheesecake Filling

  • 8 ounces cream cheese, softened
  • 1/2 cup granulated sugar
  • 1 teaspoon vanilla extract

Rolling Sugar

  • 1/4 cup granulated sugar
  • 1 teaspoon pumpkin pie spice

Instructions

  1. Cream the Butter and Sugar: In a large mixing bowl, use a hand mixer to beat together the granulated sugar and softened butter until light and fluffy, about 1-2 minutes. Add the egg, pumpkin puree, and vanilla extract, and mix until well combined.
  2. Mix Dry Ingredients: In a separate bowl, whisk together all-purpose flour, baking powder, salt, and pumpkin pie spice.
  3. Combine Wet and Dry Ingredients: Gradually add the dry mixture to the wet mixture, stirring until fully incorporated into a cohesive dough. Wrap the dough in plastic wrap and refrigerate for 30 minutes to firm up.
  4. Prepare Cheesecake Filling: While the cookie dough chills, beat the softened cream cheese in a medium bowl until smooth and fluffy, about 2-3 minutes. Add granulated sugar and vanilla extract and beat until well combined. Set aside.
  5. Make Rolling Sugar: In a small bowl, stir together the granulated sugar and pumpkin pie spice to make the coating for the dough balls.
  6. Shape and Coat Cookies: Remove the chilled dough from the refrigerator and roll into 1-inch balls. Roll each ball in the pumpkin spice sugar mixture, then place on parchment-lined baking sheets about 2 inches apart.
  7. Bake Cookies: Bake in a preheated 350°F (175°C) oven for 12 minutes, or until the edges are lightly golden.
  8. Create Indentations: Remove from the oven and, while still warm, use the back of a 1/2 or 1 tablespoon measuring spoon to press an indentation into the center of each cookie.
  9. Cool and Fill: Let the cookies cool on the baking sheet for 5 minutes, then transfer to a wire rack to cool completely. Once cooled, spoon the cheesecake filling into the center of each cookie and sprinkle with any remaining rolling sugar mixture if desired.

Notes

  • For best results, make sure both the butter and cream cheese are softened to room temperature before mixing.
  • Chilling the dough prevents the cookies from spreading too much during baking.
  • You can make the cookie and cheesecake components a day in advance and assemble before serving.
  • Store cookies in an airtight container in the refrigerator due to the cream cheese filling.

Nutrition

  • Serving Size: 1 cookie
  • Calories: 211 kcal
  • Sugar: 19g
  • Sodium: 83mg
  • Fat: 9g
  • Saturated Fat: 6g
  • Unsaturated Fat: 3g
  • Trans Fat: 1g
  • Carbohydrates: 30g
  • Fiber: 1g
  • Protein: 2g
  • Cholesterol: 33mg

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